Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs36009270 | chr18:5248587 | T/A | 1.28E-8 | 213 | 9.05 | 12.57 | 4.85 | KM Plot |
| BLCA | rs366526 | chr8:50838848 | A/G | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs369452289 | chr15:40922524 | ATT/A | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs370365051 | chr17:58117525 | GTA/G | 2.31E-5 | 213 | 9.03 | 11.53 | 5.98 | KM Plot |
| BLCA | rs370443953 | chr8:50795246 | AT/ATT | 2.59E-5 | 215 | 10.13 | 9.03 | 1.87 | KM Plot |
| BLCA | rs3739647 | chr9:5774159 | C/T | 0 | 216 | 2.07 | 10.12 | 9.07 | KM Plot |
| BLCA | rs3758730 | chr11:34475099 | A/T | 3.13E-5 | 216 | 10.7 | 7.43 | 3.3 | KM Plot |
| BLCA | rs3785303 | chr16:524305 | T/G | 3.15E-8 | 210 | 10.1 | 6.8 | 2.12 | KM Plot |
| BLCA | rs380279 | chr8:50843927 | T/G | 1.61E-5 | 216 | 0.98 | 9.03 | 10.13 | KM Plot |
| BLCA | rs3808355 | chr7:100492298 | C/T | 1.41E-5 | 216 | 11.07 | 9.47 | 3.98 | KM Plot |
| BLCA | rs3808356 | chr7:100492322 | C/T | 1.41E-5 | 216 | 11.07 | 9.47 | 3.98 | KM Plot |
| BLCA | rs3837776 | chr16:524961 | CATT/C | 2.42E-8 | 212 | 10.32 | 6.68 | 2.12 | KM Plot |
| BLCA | rs399499 | chr16:20679530 | C/A | 0.000135 | 214 | 8.95 | 12.78 | 5.93 | KM Plot |
| BLCA | rs402156 | chr8:50839143 | A/C | 1.59E-5 | 216 | 10.53 | 9.03 | 0.98 | KM Plot |
| BLCA | rs4144242 | chr15:41006987 | G/A | 1.33E-8 | 212 | 10.72 | 7.67 | 5.28 | KM Plot |